Project information
Classification of brain tumors using advanced techniques of multimodal diffusion MRI data
Information
- Project Identification
- NU21-08-00359
- Project Period
- 5/2021 - 12/2025
- Investor / Pogramme / Project type
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Ministry of Health of the CR
- Ministry of Health Research Programme 2020 - 2026
- Subprogram 1 - standard
- MU Faculty or unit
- Faculty of Informatics
- Cooperating Organization
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University Hospital Brno-Bohunice
- Responsible person doc. MUDr. Miloš Keřkovský, Ph.D.
Brain tumours comprise a relatively rare disease, but one that is a significant cause of morbidity and mortality. Diagnosis of brain tumours, which is based mainly on magnetic resonance imaging (MRI), is crucial for choosing optimal treatment strategies. In many cases, however, MRI provides non-specific findings and differentiation of individual types of tumours may be problematic using conventional MRI methods. In recent years, various MRI diffusion imaging techniques have been introduced that, in conjunction with advanced data analysis, have the potential to upgrade the possibilities for non-invasive classification of brain tumours. The main goal of this project will be to develop automated methodological procedures enabling the differentiation of individual types of brain tumours based on multimodal MRI data. The prospective study will include about 240 patients with brain tumours who will undergo MRI of the brain and subsequent resection or stereotactic biopsy of the pathological brain lesion. The MRI protocol will include diffusion tensor imaging (DTI) and intra-voxel incoherent motion (IVIM) techniques. Using machine-learning methods, automated techniques of MRI images segmentation will be developed together with advanced classification algorithms enabling differentiation of individual tumour types based on their morphological and diffusion features. The accuracy of the stated procedures in the matter of differentiating individual types of tumours will be verified in correlation with histopathological findings.
Sustainable Development Goals
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Publications
Total number of publications: 9
2025
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CDF Normalizer (lib)
STOKLASA Roman
Software
Year: 2025
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Image Harmonization Using Robust Restricted Cdf Matching
STOKLASA Roman
Article in Proceedings
2025 IEEE International Symposium on Biomedical Imaging, year: 2025
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Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge
ZENK Maximilian BAID Ujjwal PATI Sarthak LINARDOS Akis EDWARDS Brandon SHELLER Micah FOLEY Patrick ARISTIZABAL Alejandro ZIMMERER David GRUZDEV Alexey MARTIN Jason SHINOHARA Russell T REINKE Annika ISENSEE Fabian PARAMPOTTUPADAM Santhosh PAREKH Kaushal FLOCA Ralf KASSEM Hasan BAHETI Bhakti THAKUR Siddhesh CHUNG Verena KUSHIBAR Kaisar LEKADIR Karim JIANG Meirui YIN Youtan YANG Hongzheng LIU Quande CHEN Cheng DOU Qi PHENG-ANN Heng ZHANG Xiaofan ZHANG Shaoting KHAN Muhammad Irfan AZEEM Mohammad Ayyaz JAFARITADI Mojtaba ALHONIEMI Esa KONTIO Elina KHAN Suleiman A MÄCHLER Leon EZHOV Ivan KOFLER Florian SHIT Suprosanna PAETZOLD Johannes C LOEHR Timo WIESTLER Benedikt PEIRIS Himashi PAWAR Kamlesh ZHONG Shenjun CHEN Zhaolin HAYAT Munawar EGAN Gary HARANDI Mehrtash POLAT Ece Isik POLAT Gorkem KOCYIGIT Altan TEMIZEL Alptekin TULADHAR Anup TYAGI Lakshay SOUZA Raissa FORKERT Nils D MOUCHES Pauline WILMS Matthias SHAMBHAT Vishruth MAURYA Akansh DANANNAVAR Shubham Subhas KALLA Rohit ANAND Vikas Kumar KRISHNAMURTHI Ganapathy NALAWADE Sahil GANESH Chandan WAGNER Ben REDDY Divya DAS Yudhajit YU Fang F FEI Baowei MADHURANTHAKAM Ananth J MALDJIAN Joseph SINGH Gaurav REN Jianxun ZHANG Wei AN Ning HU Qingyu ZHANG Youjia ZHOU Ying SIOMOS Vasilis TARRONI Giacomo PASSERRAT-PALMBACH Jonathan RAWAT Ambrish ZIZZO Giulio KADHE Swanand Ravindra EPPERLEIN Jonathan P BRAGHIN Stefano WANG Yuan KANAGAVELU Renuga WEI Qingsong YANG Yechao LIU Yong KOTOWSKI Krzysztof ADAMSKI Szymon MACHURA Bartosz MALARA Wojciech ZARUDZKI Lukasz NALEPA Jakub SHI Yaying GAO Hongjian AVESTIMEHR Salman YAN Yonghong AKBAR Agus S KONDRATEVA Ekaterina YANG Hua LI Zhaopei HUNG-YU Wu ROTH Johannes SAUERESSIG Camillo MILESI Alexandre NGUYEN Quoc D GRUENHAGEN Nathan J TSUNG-MING Huang MA Jun SINGH Har Shwinder H NAI-YU Pan ZHANG Dingwen ZEINELDIN Ramy A FUTREGA Michal YUAN Yading CONTE Gian Marco FENG Xue PHAM Quan D XIA Yong JIANG Zhifan LUU Huan Minh DOBKO Mariia CARRÉ Alexandre TUCHINOV Bair MOHY-UD-DIN Hassan ALAM Saruar SINGH Anup SHAH Nameeta WANG Weichung SAKO Chiharu BILELLO Michel GHODASARA Satyam MOHAN Suyash DAVATZIKOS Christos CALABRESE Evan RUDIE Jeffrey VILLANUEVA-MEYER Javier CHA Soonmee HESS Christopher MONGAN John INGALHALIKAR Madhura JADHAV Manali PANDEY Umang SAINI Jitender HUANG Raymond Y CHANG Ken MINH-SON To BHARDWAJ Sargam CHONG Chee AGZARIAN Marc KOZUBEK Michal LUX Filip MICHÁLEK Jan MATULA Petr KEŘKOVSKÝ Miloš KOPŘIVOVÁ Tereza DOSTÁL Marek VYBÍHAL Václav PINHO Marco C HOLCOMB James METZ Marie JAIN Rajan LEE Matthew D LUI Yvonne W TIWARI Pallavi VERMA Ruchika BAREJA Rohan YADAV Ipsa CHEN Jonathan KUMAR Neeraj GUSEV Yuriy BHUVANESHWAR Krithika SAYAH Anousheh BENCHEQROUN Camelia BELOUALI Anas MADHAVAN Subha COLEN Rivka R KOTROTSOU Aikaterini VOLLMUTH Philipp BRUGNARA Gianluca PREETHA Chandrakanth J SAHM Felix BENDSZUS Martin WICK Wolfgang MAHAJAN Abhishek BALANA Carmen CAPELLADES Jaume PUIG Josep CHOI Yoon Seong SEUNG-KOO Lee CHANG Jong Hee AHN Sung Soo SHAYKH Hassan F HERRERA-TRUJILLO Alejandro TRUJILLO Maria ESCOBAR William ABELLO Ana BERNAL Jose GÓMEZ Jhon LAMONTAGNE Pamela MARCUS Daniel S MILCHENKO Mikhail NAZERI Arash LANDMAN Bennett RAMADASS Karthik XU Kaiwen CHOTAI Silky CHAMBLESS Lola B MISTRY Akshitkumar THOMPSON Reid C SRINIVASAN Ashok BAPURAJ J Rajiv RAO Arvind WANG Nicholas YOSHIAKI Ota MORITANI Toshio TURK Sevcan LEE Joonsang PRABHUDESAI Snehal GARRETT John LARSON Matthew JERAJ Robert LI Hongwei WEISS Tobias WELLER Michael BINK Andrea POUYMAYOU Bertrand SHARMA Sonam TZU-CHI Tseng ADABI Saba FALCAO Alexandre Xavier MARTINS Samuel B TEIXEIRA Bernardo C A SPRENGER Flávia MENOTTI David LUCIO Diego R NICLOU Simone P KEUNEN Olivier ANN-CHRISTIN Hau PELAEZ Enrique FRANCO-MALDONADO Heydy LOAYZA Francis QUEVEDO Sebastian MCKINLEY Richard SLOTBOOM Johannes RADOJEWSKI Piotr MEIER Raphael WIEST Roland TRENKLER Johannes PICHLER Josef NECKER Georg HAUNSCHMIDT Andreas MECKEL Stephan GUEVARA Pamela TORCHE Esteban MENDOZA Cristobal FRANCO Vera RÍOS Elvis LÓPEZ Eduardo VELASTIN Sergio A CHOI Joseph BAEK Stephen KIM Yusung ISMAEL Heba ALLEN Bryan BUATTI John M ZAMPAKIS Peter PANAGIOTOPOULOS Vasileios TSIGANOS Panagiotis ALEXIOU Sotiris HALIASSOS Ilias ZACHARAKI Evangelia I MOUSTAKAS Konstantinos KALOGEROPOULOU Christina KARDAMAKIS Dimitrios M LUO Bing POISSON Laila M WEN Ning VALLIERES Martin LOUTFI Mahdi Ait Lhaj FORTIN David LEPAGE Martin MORÓN Fanny MANDEL Jacob SHUKLA Gaurav LIEM Spencer ALEXANDRE Gregory S LOMBARDO Joseph PALMER Joshua D FLANDERS Adam E DICKER Adam P OGBOLE Godwin OYEKUNLE Dotun ODAFE-OYIBOTHA Olubunmi OSOBU Babatunde HIKIMA Mustapha Shu'aibu SONEYE Mayowa DAKO Farouk DORCAS Adeleye MURCIA Derrick FU Eric HAAS Rourke THOMPSON John A ORMOND David Ryan CURRIE Stuart FATANIA Kavi FROOD Russell SIMPSON Amber L PEOPLES Jacob J HU Ricky CUTLER Danielle MORAES Fabio Y TRAN Anh HAMGHALAM Mohammad BOSS Michael A GIMPEL James VEETTIL Deepak Kattil SCHMIDT Kendall CIMINO Lisa PRICE Cynthia BIALECKI Brian MARELLA Sailaja APGAR Charles JAKAB Andras MARC-ANDRÉ Weber COLAK Errol KLEESIEK Jens FREYMANN John B KIRBY Justin S MAIER-HEIN Lena ALBRECHT Jake MATTSON Peter KARARGYRIS Alexandros SHAH Prashant MENZE Bjoern MAIER-HEIN Klaus BAKAS Spyridon
Article in Periodical
Nature Communications, year: 2025, volume: 16, edition: 1, DOI
2024
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Brain MRI Screening Tool
STOKLASA Roman STATHOPOULOS Ioannis
Software
Year: 2024
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Brain MRI Screening Tool with Federated Learning
STOKLASA Roman STATHOPOULOS Ioannis KARAVASILIS Efstratios EFSTATHOPOULOS Efstathios DOSTÁL Marek KEŘKOVSKÝ Miloš KOZUBEK Michal SERIO Luigi
Article in Proceedings
2024 IEEE International Symposium on Biomedical Imaging, year: 2024
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Possibilities of Using Multi-b-value Diffusion Magnetic Resonance Imaging for Classification of Brain Lesions
KOPŘIVOVÁ Tereza KEŘKOVSKÝ Miloš JŮZA Tomáš VYBÍHAL Václav ROHAN Tomáš KOZUBEK Michal DOSTÁL Marek
Article in Periodical
Academic Radiology, year: 2024, volume: 31, edition: 1, DOI
2023
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Can intravoxel incoherent motion MRI predict meningioma consistency?
KOPŘIVOVÁ Tereza DOSTÁL Marek JŮZA Tomáš DUBA Miloš ROŠKOVÁ Ivana VYBÍHAL Václav NEUMAN Eduard KEŘKOVSKÝ Miloš
Conference abstract
Year: 2023, type: Conference abstract
2022
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Differentiation of high grade glioma and brain metastasis using intravoxel incoherent motion MRI
KEŘKOVSKÝ Miloš DOSTÁL Marek KOPŘIVOVÁ Tereza JŮZA Tomáš VYBÍHAL Václav NEUMAN Eduard MATULA Petr KOZUBEK Michal
Appeared in Conference without Proceedings
Year: 2022, type: Appeared in Conference without Proceedings
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Federated learning enables big data for rare cancer boundary detection
PATI Sarthak BAID Ujjwal EDWARDS Brandon SHELLER Micah WANG Shih-Han REINA G Anthony FOLEY Patrick GRUZDEV Alexey KARKADA Deepthi DAVATZIKOS Christos SAKO Chiharu GHODASARA Satyam BILELLO Michel MOHAN Suyash VOLLMUTH Philipp BRUGNARA Gianluca PREETHA Chandrakanth J SAHM Felix MAIER-HEIN Klaus ZENK Maximilian BENDSZUS Martin WICK Wolfgang CALABRESE Evan RUDIE Jeffrey VILLANUEVA-MEYER Javier CHA Soonmee INGALHALIKAR Madhura JADHAV Manali PANDEY Umang SAINI Jitender GARRETT John LARSON Matthew JERAJ Robert CURRIE Stuart FROOD Russell FATANIA Kavi HUANG Raymond Y CHANG Ken QUINTERO Carmen Balana CAPELLADES Jaume PUIG Josep TRENKLER Johannes PICHLER Josef NECKER Georg HAUNSCHMIDT Andreas MECKEL Stephan SHUKLA Gaurav LIEM Spencer ALEXANDER Gregory S LOMBARDO Joseph PALMER Joshua D FLANDERS Adam E DICKER Adam P SAIR Haris I JONES Craig K VENKATARAMAN Archana JIANG Meirui SO Tiffany Y CHEN Cheng HENG Pheng Ann DOU Qi KOZUBEK Michal LUX Filip MICHÁLEK Jan MATULA Petr KEŘKOVSKÝ Miloš KOPŘIVOVÁ Tereza DOSTÁL Marek VYBÍHAL Václav VOGELBAUM Michael A MITCHELL J Ross FARINHAS Joaquim MALDJIAN Joseph A YOGANANDA Chandan Ganesh Bangalore PINHO Marco C REDDY Divya HOLCOMB James WAGNER Benjamin C ELLINGSON Benjamin M CLOUGHESY Timothy F RAYMOND Catalina OUGHOURLIAN Talia HAGIWARA Akifumi WANG Chencai TO Minh-Son BHARDWAJ Sargam CHONG Chee AGZARIAN Marc FALCAO Alexandre Xavier MARTINS Samuel B TEIXEIRA Bernardo C A SPRENGER Flávia MENOTTI David LUCIO Diego R LAMONTAGNE Pamela MARCUS Daniel WIESTLER Benedikt KOFLER Florian EZHOV Ivan METZ Marie JAIN Rajan LEE Matthew LUI Yvonne W MCKINLEY Richard SLOTBOOM Johannes RADOJEWSKI Piotr MEIER Raphael WIEST Roland MURCIA Derrick FU Eric HAAS Rourke THOMPSON John ORMOND David Ryan BADVE Chaitra SLOAN Andrew E VADMAL Vachan WAITE Kristin COLEN Rivka R PEI Linmin AK Murat SRINIVASAN Ashok BAPURAJ J Rajiv RAO Arvind WANG Nicholas YOSHIAKI Ota MORITANI Toshio TURK Sevcan LEE Joonsang PRABHUDESAI Snehal MORÓN Fanny MANDEL Jacob KAMNITSAS Konstantinos GLOCKER Ben DIXON Luke V M WILLIAMS Matthew ZAMPAKIS Peter PANAGIOTOPOULOS Vasileios TSIGANOS Panagiotis ALEXIOU Sotiris HALIASSOS Ilias ZACHARAKI Evangelia I MOUSTAKAS Konstantinos KALOGEROPOULOU Christina KARDAMAKIS Dimitrios M CHOI Yoon Seong LEE Seung-Koo CHANG Jong Hee AHN Sung Soo LUO Bing POISSON Laila WEN Ning TIWARI Pallavi VERMA Ruchika BAREJA Rohan YADAV Ipsa CHEN Jonathan KUMAR Neeraj SMITS Marion VAN DER VOORT Sebastian R ALAFANDI Ahmed INCEKARA Fatih WIJNENGA Maarten M J KAPSAS Georgios GAHRMANN Renske SCHOUTEN Joost W DUBBINK Hendrikus J VINCENT Arnaud J P E VAN DEN BENT Martin J FRENCH Pim J KLEIN Stefan YUAN Yading SHARMA Sonam TSENG Tzu-Chi ADABI Saba NICLOU Simone P KEUNEN Olivier HAU Ann-Christin VALLIERES Martin FORTIN David LEPAGE Martin LANDMAN Bennett RAMADASS Karthik XU Kaiwen CHOTAI Silky CHAMBLESS Lola B MISTRY Akshitkumar THOMPSON Reid C GUSEV Yuriy BHUVANESHWAR Krithika SAYAH Anousheh BENCHEQROUN Camelia BELOUALI Anas MADHAVAN Subha BOOTH Thomas C CHELLIAH Alysha MODAT Marc SHUAIB Haris DRAGOS Carmen ABAYAZEED Aly KOLODZIEJ Kenneth HILL Michael ABBASSY Ahmed GAMAL Shady MEKHAIMAR Mahmoud QAYATI Mohamed REYES Mauricio PARK Ji Eun YUN Jihye KIM Ho Sung MAHAJAN Abhishek MUZI Mark BENSON Sean BEETS-TAN Regina G H TEUWEN Jonas HERRERA-TRUJILLO Alejandro TRUJILLO Maria ESCOBAR William ABELLO Ana BERNAL Jose GÓMEZ Jhon CHOI Joseph BAEK Stephen KIM Yusung ISMAEL Heba ALLEN Bryan BUATTI John M KOTROTSOU Aikaterini LI Hongwei WEISS Tobias WELLER Michael BINK Andrea POUYMAYOU Bertrand SHAYKH Hassan F SALTZ Joel PRASANNA Prateek SHRESTHA Sampurna MANI Kartik M PAYNE David KURC Tahsin PELAEZ Enrique FRANCO-MALDONADO Heydy LOAYZA Francis QUEVEDO Sebastian GUEVARA Pamela TORCHE Esteban MENDOZA Cristobal FRANCO Vera RÍOS Elvis LÓPEZ Eduardo VELASTIN Sergio A OGBOLE Godwin SONEYE Mayowa OYEKUNLE Dotun ODAFE-OYIBOTHA Olubunmi OSOBU Babatunde SHU'AIBU Mustapha DORCAS Adeleye DAKO Farouk SIMPSON Amber L HAMGHALAM Mohammad PEOPLES Jacob J HU Ricky TRAN Anh CUTLER Danielle MORAES Fabio Y BOSS Michael A GIMPEL James VEETTIL Deepak Kattil SCHMIDT Kendall BIALECKI Brian MARELLA Sailaja PRICE Cynthia CIMINO Lisa APGAR Charles SHAH Prashant MENZE Bjoern BARNHOLTZ-SLOAN Jill S MARTIN Jason BAKAS Spyridon
Article in Periodical
Nature Communications, year: 2022, volume: 13, edition: 7346, DOI