Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol

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Authors	SEHNAL David GRANT O.C.
Year of publication	2019
Type	Article in Periodical
Magazine / Source	Journal of Proteome Research
MU Faculty or unit	Central European Institute of Technology
Citation
Web	http://dx.doi.org/10.1021/acs.jproteome.8b00473
Doi	http://dx.doi.org/10.1021/acs.jproteome.8b00473
Keywords	oligosaccharide; glycan; carbohydrate; glycoprotein; SNFG; 3D-SNFG; visualization; LiteMol; structure; symbol nomenclature for glycans
Description	The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol.
Related projects:	ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences Czech National Infrastructure for Biological Data ELIXIR-CZ: Budování kapacit